Oryza glaberrima vs Oryza nivara Synteny results

The syntenic regions between Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) and Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 433 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza glaberrima

Uncovered: 42,042,201 out of 316,419,574
Covered: 274,377,373 out of 316,419,574

Uncovered: 3,726,090 out of 36,293,721
Covered: 32,567,631 out of 36,293,721

Oryza nivara

Uncovered: 19,090,698 out of 337,950,324
Covered: 318,859,626 out of 337,950,324

Uncovered: 1,839,054 out of 42,562,444
Covered: 40,723,390 out of 42,562,444