Oryza brachyantha vs Oryza nivara Synteny results

The syntenic regions between Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) and Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 330 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza brachyantha

Uncovered: 13,389,574 out of 260,838,168
Covered: 247,448,594 out of 260,838,168

Uncovered: 902,569 out of 33,473,466
Covered: 32,570,897 out of 33,473,466

Oryza nivara

Uncovered: 9,955,383 out of 337,950,324
Covered: 327,994,941 out of 337,950,324

Uncovered: 769,622 out of 42,562,444
Covered: 41,792,822 out of 42,562,444