Oryza nivara vs Oryza sativa Japonica Group Synteny results
The syntenic regions between Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 511 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 11,988,097 out of 337,950,324
Uncovered: 577,561 out of 42,562,444
|Oryza sativa Japonica Group||
Uncovered: 15,415,393 out of 375,049,285
Uncovered: 507,556 out of 34,424,450