Oryza glumipatula vs Oryza sativa Japonica Group Synteny results
The syntenic regions between Oryza glumipatula (Oryza glumipatula, Oryza_glumaepatula_v1.5) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 112 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 2,731,306 out of 372,860,283
Uncovered: 62,870 out of 41,246,944
|Oryza sativa Japonica Group||
Uncovered: 4,298,378 out of 375,049,285
Uncovered: 110,056 out of 34,424,450