Oryza nivara vs Oryza punctata Synteny results

The syntenic regions between Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) and Oryza punctata (Oryza punctata, Oryza_punctata_v1.2) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 454 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza nivara

Uncovered: 17,691,892 out of 337,950,324
Covered: 320,258,432 out of 337,950,324

Uncovered: 1,108,563 out of 42,562,444
Covered: 41,453,881 out of 42,562,444

Oryza punctata

Uncovered: 19,874,970 out of 393,816,603
Covered: 373,941,633 out of 393,816,603

Uncovered: 817,370 out of 39,315,246
Covered: 38,497,876 out of 39,315,246