Oryza barthii vs Oryza punctata Synteny results

The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza punctata (Oryza punctata, Oryza_punctata_v1.2) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 109 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza barthii

Uncovered: 690,070 out of 308,272,304
Covered: 307,582,234 out of 308,272,304

Uncovered: 32,069 out of 39,538,509
Covered: 39,506,440 out of 39,538,509

Oryza punctata

Uncovered: 1,278,885 out of 393,816,603
Covered: 392,537,718 out of 393,816,603

Uncovered: 118,156 out of 39,315,246
Covered: 39,197,090 out of 39,315,246