Oryza barthii vs Oryza nivara Synteny results
The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 476 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 9,363,129 out of 308,272,304
Uncovered: 559,487 out of 39,538,509
Uncovered: 13,518,547 out of 337,950,324
Uncovered: 779,732 out of 42,562,444