Oryza brachyantha vs Oryza sativa Indica Group Synteny results

The syntenic regions between Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) and Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) were extracted from their pairwise alignment in Ensembl Plants release 67. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 109 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza brachyantha

Uncovered: 13,808,949 out of 260,838,168
Covered: 247,029,219 out of 260,838,168

Uncovered: 944,779 out of 33,473,466
Covered: 32,528,687 out of 33,473,466

Oryza sativa Indica Group

Uncovered: 57,107,522 out of 427,004,890
Covered: 369,897,368 out of 427,004,890

Uncovered: 3,196,873 out of 45,465,969
Covered: 42,269,096 out of 45,465,969