Oryza brachyantha vs Oryza sativa Japonica Group Synteny results
The syntenic regions between Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 73. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 118 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 9,728,741 out of 260,838,168
Uncovered: 545,637 out of 33,473,466
|Oryza sativa Japonica Group||
Uncovered: 3,037,019 out of 375,049,285
Uncovered: 109,151 out of 34,424,450