Oryza sativa Indica Group vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 73. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 111 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Indica Group

Uncovered: 54,334,499 out of 427,004,890
Covered: 372,670,391 out of 427,004,890

Uncovered: 3,012,713 out of 45,465,969
Covered: 42,453,256 out of 45,465,969

Oryza sativa Japonica Group

Uncovered: 8,457,311 out of 375,049,285
Covered: 366,591,974 out of 375,049,285

Uncovered: 315,258 out of 34,424,450
Covered: 34,109,192 out of 34,424,450