Oryza sativa Japonica Group vs Vitis vinifera Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Vitis vinifera (Vitis vinifera, 12X) were extracted from their pairwise alignment in Ensembl Plants release 73. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 1,043 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 326,294,362 out of 375,049,285
Covered: 48,754,923 out of 375,049,285

Uncovered: 29,077,943 out of 34,424,450
Covered: 5,346,507 out of 34,424,450

Vitis vinifera

Uncovered: 413,150,773 out of 486,265,422
Covered: 73,114,649 out of 486,265,422

Uncovered: 25,532,150 out of 32,794,161
Covered: 7,262,011 out of 32,794,161