Arabidopsis lyrata vs Vitis vinifera Synteny results

The syntenic regions between Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata, v.1.0) and Vitis vinifera (Vitis vinifera, 12X) were extracted from their pairwise alignment in Ensembl Plants release 66. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 651 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Arabidopsis lyrata

Uncovered: 125,348,713 out of 206,667,935
Covered: 81,319,222 out of 206,667,935

Uncovered: 17,643,796 out of 35,389,059
Covered: 17,745,263 out of 35,389,059

Vitis vinifera

Uncovered: 244,431,376 out of 486,265,422
Covered: 241,834,046 out of 486,265,422

Uncovered: 11,031,451 out of 32,794,161
Covered: 21,762,710 out of 32,794,161