Arabidopsis lyrata vs Arabidopsis thaliana Synteny results

The syntenic regions between Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata, v.1.0) and Arabidopsis thaliana (Arabidopsis thaliana, TAIR10) were extracted from their pairwise alignment in Ensembl Plants release 66. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 100 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Arabidopsis lyrata

Uncovered: 24,672,512 out of 206,667,935
Covered: 181,995,423 out of 206,667,935

Uncovered: 865,281 out of 35,389,059
Covered: 34,523,778 out of 35,389,059

Arabidopsis thaliana

Uncovered: 6,254,786 out of 119,667,750
Covered: 113,412,964 out of 119,667,750

Uncovered: 301,940 out of 33,774,176
Covered: 33,472,236 out of 33,774,176