Arabidopsis thaliana vs Vitis vinifera Synteny results
The syntenic regions between Arabidopsis thaliana (Arabidopsis thaliana, TAIR10) and Vitis vinifera (Vitis vinifera, 12X) were extracted from their pairwise alignment in Ensembl Plants release 60. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 709 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 63,770,279 out of 119,667,750
Uncovered: 15,544,548 out of 33,774,176
Uncovered: 235,869,075 out of 486,265,422
Uncovered: 10,590,299 out of 32,794,161