Arabidopsis thaliana vs Vitis vinifera Synteny results

The syntenic regions between Arabidopsis thaliana (Arabidopsis thaliana, TAIR10) and Vitis vinifera (Vitis vinifera, 12X) were extracted from their pairwise alignment in Ensembl Plants release 60. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 709 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Arabidopsis thaliana

Uncovered: 63,770,279 out of 119,667,750
Covered: 55,897,471 out of 119,667,750

Uncovered: 15,544,548 out of 33,774,176
Covered: 18,229,628 out of 33,774,176

Vitis vinifera

Uncovered: 235,869,075 out of 486,265,422
Covered: 250,396,347 out of 486,265,422

Uncovered: 10,590,299 out of 32,794,161
Covered: 22,203,862 out of 32,794,161