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Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Chlamydomonas reinhardtii (Chlamydomonas reinhardtii strain CC-503 cw92 mt+)
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Ostreococcus lucimarinus (Ostreococcus lucimarinus CCE9901)
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-
Oryza sativa Indica Group (Oryza sativa Indica Group strain 93-11)
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Oryza nivara (Oryza sativa f. spontanea strain IRGC:100897)
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-
Oryza rufipogon (Oryza rufipogon strain W1943)
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Oryza sativa Japonica Group (Oryza sativa Japonica Group strain Nipponbare)
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-
Oryza barthii (Oryza barthii strain IRGC:105608)
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Oryza glaberrima (Oryza glaberrima strain CG14)
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Oryza meridionalis (Oryza meridionalis strain OR44 (W2112))
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Oryza longistaminata (Oryza longistaminata)
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Oryza glumipatula (Oryza glumipatula)
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Oryza punctata (Oryza punctata strain IRGC:105690)
---------------------------------
Oryza brachyantha (Oryza brachyantha strain IRGC:101232)
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Leersia perrieri (Leersia perrieri strain IRGC:105164)
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-
Triticum aestivum (component U) (Triticum aestivum strain Chinese spring (component U))
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Triticum turgidum (component U) (Triticum turgidum subsp. durum strain svevo (component U))
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Triticum turgidum (component A) (Triticum turgidum subsp. durum strain svevo (component A))
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-
Triticum dicoccoides (component A) (Triticum dicoccoides strain Zavitan (Atlit2015) (component A))
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-
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Triticum aestivum (component A) (Triticum aestivum strain Chinese spring (component A))
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Triticum urartu (Triticum urartu strain G1812 (PI428198))
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-
Aegilops tauschii (Aegilops tauschii subsp. strangulata strain AL8/78)
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Triticum aestivum (component D) (Triticum aestivum strain Chinese spring (component D))
----------------------
Triticum dicoccoides (component B) (Triticum dicoccoides strain Zavitan (Atlit2015) (component B))
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Triticum aestivum (component B) (Triticum aestivum strain Chinese spring (component B))
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Triticum turgidum (component B) (Triticum turgidum subsp. durum strain svevo (component B))
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Hordeum vulgare (Hordeum vulgare subsp. vulgare strain Morex)
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Brachypodium distachyon (Brachypodium distachyon strain Bd21)
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-
Zea mays (Zea mays strain B73)
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Sorghum bicolor (Sorghum bicolor strain BTx623)
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Panicum hallii FIL2 (Panicum hallii strain FIL2)
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Panicum hallii HAL2 (Panicum hallii var. hallii strain HAL2)
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Setaria italica (Setaria italica strain Yugu1)
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Eragrostis tef (Eragrostis tef strain Tsedey)
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Musa acuminata (Musa acuminata subsp. malaccensis strain DH-Pahang)
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Dioscorea rotundata (Dioscorea rotundata strain TDr96_F1)
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Brassica rapa (Brassica rapa strain Chiifu-401-42)
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-
Brassica oleracea (Brassica oleracea var. oleracea strain TO1000)
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----
Brassica napus (Brassica napus strain Darmor-bzh)
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Arabidopsis halleri (Arabidopsis halleri subsp. gemmifera strain W302)
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-
Arabidopsis thaliana (Arabidopsis thaliana strain Columbia)
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Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata strain MN47)
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Corchorus capsularis (Corchorus capsularis strain CVL-1)
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-
Gossypium raimondii (Gossypium raimondii strain CMD 10)
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Theobroma cacao (Theobroma cacao strain Criollo B97-61/B2)
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---------------
Citrus clementina (Citrus clementina strain Clemenules)
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-
Populus trichocarpa (Populus trichocarpa strain Nisqually 1)
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Manihot esculenta (Manihot esculenta strain AM560-2)
--------------------------
-
Medicago truncatula (Medicago truncatula strain A17)
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Trifolium pratense (Trifolium pratense strain Milvus B)
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-
Vigna angularis (Vigna angularis strain Jingnong 6)
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-
-
----
Vigna radiata (Vigna radiata var. radiata strain VC1973A)
--------------------------------
Phaseolus vulgaris (Phaseolus vulgaris strain G19833)
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Glycine max (Glycine max strain Williams 82)
---------------------------------
Lupinus angustifolius (Lupinus angustifolius strain Tanjil)
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Cucumis sativus (Cucumis sativus strain 9930)
-
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Prunus avium (Prunus avium strain Satonishiki)
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Prunus persica (Prunus persica strain Lovell)
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Vitis vinifera (Vitis vinifera strain PN40024)
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-
Helianthus annuus (Helianthus annuus strain XRQ/B)
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Daucus carota (Daucus carota subsp. sativus strain DH1)
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-
Solanum lycopersicum (Solanum lycopersicum strain Heinz 1706)
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Solanum tuberosum (Solanum tuberosum strain DM 1-3 516 R44)
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Capsicum annuum (Capsicum annuum strain Criollo de Morelos 334)
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Nicotiana attenuata (Nicotiana attenuata strain UT)
------------------------------
Cynara cardunculus (Cynara cardunculus var. scolymus)
------------------------------
Ipomoea triloba (Ipomoea triloba strain NCNSP0323)
------------------------------
Coffea canephora (Coffea canephora strain DH200-94)
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---------------------
Actinidia chinensis (Actinidia chinensis var. chinensis strain Red5)
------------------------------------
Beta vulgaris (Beta vulgaris subsp. vulgaris strain KWS2320 DH)
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Amborella trichopoda (Amborella trichopoda)
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Selaginella moellendorffii (Selaginella moellendorffii)
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Marchantia polymorpha (Marchantia polymorpha strain Tak-1)
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Physcomitrella patens (Physcomitrella patens strain Gransden 2004)
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-
Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D)
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Galdieria sulphuraria (Galdieria sulphuraria strain 074W)
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Chondrus crispus (Chondrus crispus strain Stackhouse)
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Drosophila melanogaster (Drosophila melanogaster)
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Caenorhabditis elegans (Caenorhabditis elegans strain N2)
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-
Human (Homo sapiens)
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C.savignyi (Ciona savignyi)
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Saccharomyces cerevisiae (Saccharomyces cerevisiae strain S288C)