Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Chlamydomonas reinhardtii (Chlamydomonas reinhardtii CC-503 cw92 mt+)
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Ostreococcus lucimarinus (Ostreococcus lucimarinus CCE9901)
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-
Oryza sativa Indica (Oryza sativa Indica Group 93-11)
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Oryza nivara (Oryza nivara)
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----
-
Oryza rufipogon (Oryza rufipogon)
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Oryza sativa Japonica (Oryza sativa Japonica Group)
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-
Oryza glaberrima (Oryza glaberrima CG14)
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----
Oryza barthii (Oryza barthii)
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Oryza longistaminata (Oryza longistaminata)
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Oryza glumaepatula (Oryza glumipatula)
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Oryza meridionalis (Oryza meridionalis)
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Oryza punctata (Oryza punctata)
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Oryza brachyantha (Oryza brachyantha)
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Leersia perrieri (Leersia perrieri)
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-
Triticum aestivum (Triticum aestivum Chinese Spring (component A))
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-------
Triticum urartu (Triticum urartu)
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-
Aegilops tauschii (Aegilops tauschii)
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Triticum aestivum (Triticum aestivum Chinese Spring (component D))
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Triticum aestivum (Triticum aestivum Chinese Spring (component B))
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-------
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Triticum aestivum (Triticum aestivum Chinese Spring (component U))
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Triticum aestivum (Triticum aestivum Chinese Spring)
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Hordeum vulgare (Hordeum vulgare subsp. vulgare)
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Brachypodium distachyon (Brachypodium distachyon (L.) Beauv)
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-
Sorghum bicolor (Sorghum bicolor)
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----
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Zea mays (Zea mays)
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Setaria italica (Setaria italica)
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Musa acuminata (Musa acuminata subsp. malaccensis DH-Pahang)
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Dioscorea rotundata (Dioscorea rotundata)
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-
Solanum lycopersicum (Solanum lycopersicum)
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Solanum tuberosum (Solanum tuberosum)
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Nicotiana attenuata str. UT (Nicotiana attenuata UT)
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Helianthus annuus (Helianthus annuus)
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-
Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata)
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Arabidopsis thaliana (Arabidopsis thaliana)
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Brassica oleracea (Brassica oleracea var. oleracea TO1000)
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-
Brassica napus (Brassica napus)
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Brassica rapa (Brassica rapa subsp. pekinensis)
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Theobroma cacao (Theobroma cacao)
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-
Corchorus capsularis (Corchorus capsularis)
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Gossypium raimondii (Gossypium raimondii)
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-
Manihot esculenta (Manihot esculenta)
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Populus trichocarpa (Populus trichocarpa)
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-
Medicago truncatula (Medicago truncatula A17)
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Trifolium pratense (Trifolium pratense)
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-
-
-
Glycine max (Glycine max)
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Phaseolus vulgaris (Phaseolus vulgaris)
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Lupinus angustifolius (Lupinus angustifolius)
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Prunus persica (Prunus persica)
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Cucumis sativus (Cucumis sativus)
-
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Vitis vinifera (Vitis vinifera PN40024)
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Beta vulgaris subsp. vulgaris (Beta vulgaris subsp. vulgaris)
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Amborella trichopoda (Amborella trichopoda)
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Selaginella moellendorffii (Selaginella moellendorffii)
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Physcomitrella patens (Physcomitrella patens ssp. patens str. Gransden 2004)
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Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D)
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-
Galdieria sulphuraria (Galdieria sulphuraria 074W)
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Chondrus crispus (Chondrus crispus PCG)
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-
Caenorhabditis elegans (Caenorhabditis elegans N2)
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Drosophila melanogaster (Drosophila melanogaster)
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-
-
C.savignyi (Ciona savignyi)
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Human (Homo sapiens)
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Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C S288C)