Upcoming Ensembl Platform Transition

This is the final release of its kind on this website.

In summer 2026, this site will bring you to the new Ensembl platform currently at beta.ensembl.org.
Please bookmark this archive to retain access to the current site, tools and functionality until they are available on the new platform -> eg63-plants.ensembl.org

Ensembl Genomes HomeEnsembl Plants HomeEnsembl Plants Home ▼
More ▼
Search »

Arabidopsis thaliana vs Oryza brachyantha LastZ results

Arabidopsis thaliana (Arabidopsis thaliana, TAIR10) and Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) were aligned using the LastZ alignment algorithm (LastZ) in Ensembl Plants release 67. Arabidopsis thaliana was used as the reference species. After running LastZ, the raw LastZ alignment blocks were chained according to their location in both genomes. During the final netting process, the best sub-chain was chosen in each region on the reference species.

Configuration parameters

No configuration parameters are available.

Statistics over 78,436 alignment blocks

Genome coverage (bp) Coding exon coverage (bp)
Arabidopsis thaliana

Uncovered: 93,841,766 out of 119,667,750
Covered: 25,825,984 out of 119,667,750

Uncovered: 14,430,260 out of 33,775,569
Matches: 12,655,561 out of 33,775,569
Mismatches: 6,328,629 out of 33,775,569
Insertions: 361,119 out of 33,775,569
Identity over aligned base-pairs: 65.4%

Oryza brachyantha

Uncovered: 242,764,829 out of 260,838,168
Covered: 18,073,339 out of 260,838,168

Uncovered: 21,003,696 out of 33,473,466
Matches: 8,131,350 out of 33,473,466
Mismatches: 4,059,114 out of 33,473,466
Insertions: 279,306 out of 33,473,466
Identity over aligned base-pairs: 65.2%

Block size distribution

Size range All 78,436 alignment blocks Blocks grouped in nets
# blocks Total size (incl. gaps) # nets Total size (incl. gaps)
1 bp - 10 bp
653
3.3 kb
10 bp - 100 bp
12,054
820.7 kb
2,139
154.2 kb
100 bp - 1 kb
61,133
20.2 Mb
14,716
6.0 Mb
1 kb - 10 kb
4,596
6.6 Mb
10,018
21.1 Mb
10 kb - 100 kb
30
383.5 kb