Oryza meridionalis vs Leersia perrieri Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Leersia perrieri (Leersia perrieri, Lperr_V1.4) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 79 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 11,547,497 out of 335,668,232
Covered: 324,120,735 out of 335,668,232

Uncovered: 721,002 out of 35,224,824
Covered: 34,503,822 out of 35,224,824

Leersia perrieri

Uncovered: 10,185,837 out of 266,687,832
Covered: 256,501,995 out of 266,687,832

Uncovered: 1,259,642 out of 36,898,596
Covered: 35,638,954 out of 36,898,596