Oryza meridionalis vs Oryza sativa Indica Group Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 97 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 8,779,578 out of 335,668,232
Covered: 326,888,654 out of 335,668,232

Uncovered: 556,386 out of 35,224,824
Covered: 34,668,438 out of 35,224,824

Oryza sativa Indica Group

Uncovered: 64,410,450 out of 427,004,890
Covered: 362,594,440 out of 427,004,890

Uncovered: 4,051,886 out of 45,465,969
Covered: 41,414,083 out of 45,465,969