Oryza meridionalis vs Oryza glaberrima Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 103 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 13,824,607 out of 335,668,232
Covered: 321,843,625 out of 335,668,232

Uncovered: 1,277,747 out of 35,224,824
Covered: 33,947,077 out of 35,224,824

Oryza glaberrima

Uncovered: 36,765,296 out of 316,419,574
Covered: 279,654,278 out of 316,419,574

Uncovered: 3,577,422 out of 36,293,721
Covered: 32,716,299 out of 36,293,721