Oryza meridionalis vs Oryza rufipogon Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 84 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 3,680,694 out of 335,668,232
Covered: 331,987,538 out of 335,668,232

Uncovered: 241,449 out of 35,224,824
Covered: 34,983,375 out of 35,224,824

Oryza rufipogon

Uncovered: 6,868,144 out of 338,040,714
Covered: 331,172,570 out of 338,040,714

Uncovered: 877,504 out of 42,763,723
Covered: 41,886,219 out of 42,763,723