Oryza meridionalis vs Oryza punctata Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza punctata (Oryza punctata, Oryza_punctata_v1.2) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 89 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 11,090,262 out of 335,668,232
Covered: 324,577,970 out of 335,668,232

Uncovered: 739,520 out of 35,224,824
Covered: 34,485,304 out of 35,224,824

Oryza punctata

Uncovered: 21,792,430 out of 393,816,603
Covered: 372,024,173 out of 393,816,603

Uncovered: 1,543,973 out of 39,315,246
Covered: 37,771,273 out of 39,315,246