Oryza meridionalis vs Oryza glumipatula Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza glumipatula (Oryza glumipatula, Oryza_glumaepatula_v1.5) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 112 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 6,641,322 out of 335,668,232
Covered: 329,026,910 out of 335,668,232

Uncovered: 375,664 out of 35,224,824
Covered: 34,849,160 out of 35,224,824

Oryza glumipatula

Uncovered: 11,235,181 out of 372,860,283
Covered: 361,625,102 out of 372,860,283

Uncovered: 1,079,965 out of 41,246,944
Covered: 40,166,979 out of 41,246,944