Oryza meridionalis vs Oryza glumipatula Synteny results
The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza glumipatula (Oryza glumipatula, Oryza_glumaepatula_v1.5) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 112 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 6,641,322 out of 335,668,232
Uncovered: 375,664 out of 35,224,824
Uncovered: 11,235,181 out of 372,860,283
Uncovered: 1,079,965 out of 41,246,944