Vitis vinifera vs Theobroma cacao Matina 1-6 Synteny results
The syntenic regions between Vitis vinifera (Vitis vinifera, 12X) and Theobroma cacao Matina 1-6 (Theobroma cacao, Theobroma_cacao_20110822) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 81 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 355,289,756 out of 486,265,422
Uncovered: 18,978,929 out of 32,794,161
|Theobroma cacao Matina 1-6||
Uncovered: 230,640,854 out of 345,993,675
Uncovered: 17,202,074 out of 34,800,751