Vitis vinifera vs Theobroma cacao Matina 1-6 Synteny results

The syntenic regions between Vitis vinifera (Vitis vinifera, 12X) and Theobroma cacao Matina 1-6 (Theobroma cacao, Theobroma_cacao_20110822) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 81 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Vitis vinifera

Uncovered: 355,289,756 out of 486,265,422
Covered: 130,975,666 out of 486,265,422

Uncovered: 18,978,929 out of 32,794,161
Covered: 13,815,232 out of 32,794,161

Theobroma cacao Matina 1-6

Uncovered: 230,640,854 out of 345,993,675
Covered: 115,352,821 out of 345,993,675

Uncovered: 17,202,074 out of 34,800,751
Covered: 17,598,677 out of 34,800,751