Actinidia chinensis vs Solanum lycopersicum Synteny results
The syntenic regions between Actinidia chinensis (Actinidia chinensis var. chinensis, Red5_PS1_1.69.0) and Solanum lycopersicum (Solanum lycopersicum, SL3.0) were extracted from their pairwise alignment in Ensembl Plants release 96. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 94 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 495,418,877 out of 553,842,477
Uncovered: 36,126,313 out of 42,227,027
Uncovered: 772,065,825 out of 827,747,456
Uncovered: 27,760,102 out of 36,416,191