Oryza sativa Japonica Group vs Panicum hallii FIL2 Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Panicum hallii FIL2 (Panicum hallii str. FIL2, PHallii_v3.1) were extracted from their pairwise alignment in Ensembl Plants release 96. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 45 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 106,747,344 out of 375,049,285
Covered: 268,301,941 out of 375,049,285

Uncovered: 5,125,991 out of 34,424,450
Covered: 29,298,459 out of 34,424,450

Panicum hallii FIL2

Uncovered: 295,617,962 out of 535,889,049
Covered: 240,271,087 out of 535,889,049

Uncovered: 4,975,764 out of 38,415,885
Covered: 33,440,121 out of 38,415,885