Aegilops tauschii vs Triticum dicoccoides Synteny results

The syntenic regions between Aegilops tauschii (Aegilops tauschii subsp. strangulata, Aet_v4.0) and Triticum dicoccoides (Triticum dicoccoides, WEWSeq_v.1.0) were extracted from their pairwise alignment in Ensembl Plants release 95. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 1,104 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Aegilops tauschii

Uncovered: 2,073,259,205 out of 4,224,915,394
Covered: 2,151,656,189 out of 4,224,915,394

Uncovered: 15,886,692 out of 53,210,770
Covered: 37,324,078 out of 53,210,770

Triticum dicoccoides

Uncovered: 6,583,461,597 out of 10,079,039,394
Covered: 3,495,577,797 out of 10,079,039,394

Uncovered: 39,866,180 out of 81,268,905
Covered: 41,402,725 out of 81,268,905