Solanum lycopersicum vs Solanum tuberosum Synteny results
The syntenic regions between Solanum lycopersicum (Solanum lycopersicum, SL3.0) and Solanum tuberosum (Solanum tuberosum, SolTub_3.0) were extracted from their pairwise alignment in Ensembl Plants release 95. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 117 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 547,132,080 out of 827,747,456
Uncovered: 7,280,194 out of 36,416,191
Uncovered: 451,540,174 out of 810,654,046
Uncovered: 8,924,022 out of 36,745,425