Oryza sativa Indica Group vs Oryza rufipogon Synteny results
The syntenic regions between Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 49 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
|Oryza sativa Indica Group||
Uncovered: 54,446,700 out of 427,004,890
Uncovered: 3,057,540 out of 45,465,969
Uncovered: 3,336,531 out of 338,040,714
Uncovered: 335,900 out of 42,763,723