Medicago truncatula vs Prunus persica Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MedtrA17_4.0) and Prunus persica (Prunus persica, Prunus_persica_NCBIv2) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 85 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 351,426,133 out of 412,800,391
Covered: 61,374,258 out of 412,800,391

Uncovered: 41,558,731 out of 50,132,764
Covered: 8,574,033 out of 50,132,764

Prunus persica

Uncovered: 173,369,610 out of 227,411,381
Covered: 54,041,771 out of 227,411,381

Uncovered: 22,547,429 out of 33,236,255
Covered: 10,688,826 out of 33,236,255