Oryza sativa Japonica Group vs Sorghum bicolor Synteny results
The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Sorghum bicolor (Sorghum bicolor, Sorghum_bicolor_NCBIv3) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 40 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
|Oryza sativa Japonica Group||
Uncovered: 176,045,362 out of 375,049,285
Uncovered: 10,951,923 out of 34,424,450
Uncovered: 464,095,008 out of 708,735,318
Uncovered: 10,734,318 out of 39,785,927