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Oryza rufipogon vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Oryza rufipogon (Oryza rufipogon, OR_W1943) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 16 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza rufipogon

Uncovered: 598,778 out of 338,040,714
Covered: 337,441,936 out of 338,040,714

Uncovered: 40,149 out of 42,763,723
Covered: 42,723,574 out of 42,763,723
Oryza sativa Japonica Group

Uncovered: 2,805,712 out of 375,049,285
Covered: 372,243,573 out of 375,049,285

Uncovered: 104,323 out of 34,818,902
Covered: 34,714,579 out of 34,818,902