Oryza barthii vs Oryza sativa Indica Group Synteny results
The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 22 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 12,311,459 out of 308,272,304
Uncovered: 1,358,691 out of 39,538,509
|Oryza sativa Indica Group||
Uncovered: 67,307,699 out of 427,004,890
Uncovered: 4,215,058 out of 45,465,969