Oryza barthii vs Oryza glaberrima Synteny results

The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 41 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza barthii

Uncovered: 9,414,709 out of 308,272,304
Covered: 298,857,595 out of 308,272,304

Uncovered: 1,121,788 out of 39,538,509
Covered: 38,416,721 out of 39,538,509

Oryza glaberrima

Uncovered: 35,060,876 out of 316,419,574
Covered: 281,358,698 out of 316,419,574

Uncovered: 3,141,993 out of 36,293,721
Covered: 33,151,728 out of 36,293,721