Oryza brachyantha vs Oryza punctata Synteny results

The syntenic regions between Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) and Oryza punctata (Oryza punctata, Oryza_punctata_v1.2) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 89 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza brachyantha

Uncovered: 10,510,594 out of 260,838,168
Covered: 250,327,574 out of 260,838,168

Uncovered: 659,522 out of 33,473,466
Covered: 32,813,944 out of 33,473,466

Oryza punctata

Uncovered: 1,524,460 out of 393,816,603
Covered: 392,292,143 out of 393,816,603

Uncovered: 121,084 out of 39,315,246
Covered: 39,194,162 out of 39,315,246