Oryza brachyantha vs Oryza punctata Synteny results
The syntenic regions between Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) and Oryza punctata (Oryza punctata, Oryza_punctata_v1.2) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 89 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 10,510,594 out of 260,838,168
Uncovered: 659,522 out of 33,473,466
Uncovered: 1,524,460 out of 393,816,603
Uncovered: 121,084 out of 39,315,246