Oryza barthii vs Oryza brachyantha Synteny results

The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 75 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza barthii

Uncovered: 723,116 out of 308,272,304
Covered: 307,549,188 out of 308,272,304

Uncovered: 47,786 out of 39,538,509
Covered: 39,490,723 out of 39,538,509

Oryza brachyantha

Uncovered: 10,525,466 out of 260,838,168
Covered: 250,312,702 out of 260,838,168

Uncovered: 685,575 out of 33,473,466
Covered: 32,787,891 out of 33,473,466