Oryza barthii vs Oryza brachyantha Synteny results
The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 75 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 723,116 out of 308,272,304
Uncovered: 47,786 out of 39,538,509
Uncovered: 10,525,466 out of 260,838,168
Uncovered: 685,575 out of 33,473,466