Oryza brachyantha vs Oryza glaberrima Synteny results
The syntenic regions between Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) and Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) were extracted from their pairwise alignment in Ensembl Plants release 67. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 81 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 11,482,452 out of 260,838,168
Uncovered: 862,921 out of 33,473,466
Uncovered: 33,227,525 out of 316,419,574
Uncovered: 3,285,590 out of 36,293,721