Oryza sativa Japonica Group vs Vitis vinifera Synteny results
The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Vitis vinifera (Vitis vinifera, 12X) were extracted from their pairwise alignment in Ensembl Plants release 73. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 1,043 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
|Oryza sativa Japonica Group||
Uncovered: 326,294,362 out of 375,049,285
Uncovered: 29,077,943 out of 34,424,450
Uncovered: 413,150,773 out of 486,265,422
Uncovered: 25,532,150 out of 32,794,161