Medicago truncatula vs Vigna unguiculata Synteny results
The syntenic regions between Medicago truncatula (Medicago truncatula, MedtrA17_4.0) and Vigna unguiculata (Vigna unguiculata, ASM411807v1) were extracted from their pairwise alignment in Ensembl Plants release 107. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 61 synteny blocks
Genome coverage (bp) | Coding exon coverage (bp) | |
---|---|---|
Medicago truncatula |
Uncovered: 231,554,439 out of 412,800,391 |
Uncovered: 25,919,023 out of 50,132,764 |
Vigna unguiculata |
Uncovered: 347,791,440 out of 519,066,764 |
Uncovered: 18,916,541 out of 38,844,626 |