Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Chlamydomonas reinhardtii
-------
Ostreococcus lucimarinus CCE9901
-----------
-
Oryza barthii
-------
----
Oryza glaberrima
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-
Oryza nivara
----------
----
Oryza sativa Indica Group
-------
----
-
Oryza sativa Japonica Group
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Oryza rufipogon
-------
----------------
Oryza longistaminata
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Oryza meridionalis
-------
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Oryza glumipatula
-------
-----------------------
Oryza punctata
---------------------------------
Oryza brachyantha
----------------------------------
Leersia perrieri
----------
-
Aegilops tauschii
-------
-------
Triticum aestivum (component D)
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-
Triticum urartu
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----
Triticum aestivum (component A)
--------------------
Triticum aestivum (component U)
-------
-------
--------
Triticum aestivum (component B)
----
----------------------
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Triticum aestivum
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Hordeum vulgare subsp. vulgare
----------
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Brachypodium distachyon
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-
Sorghum bicolor
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----
Zea mays
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Setaria italica
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Musa acuminata subsp. malaccensis
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-
Solanum tuberosum
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Solanum lycopersicum
----------------
-
Arabidopsis thaliana
----------------
----
Arabidopsis lyrata subsp. lyrata
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Brassica rapa subsp. pekinensis
----------
-------
----
-
Brassica oleracea var. oleracea
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Brassica napus
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Theobroma cacao
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-
Trifolium pratense
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----
----
Medicago truncatula
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----------
--------
Glycine max
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Prunus persica
------------------------------------
Populus trichocarpa
----------
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Vitis vinifera
-
--------------------------------
Beta vulgaris subsp. vulgaris
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Amborella trichopoda
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Selaginella moellendorffii
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Physcomitrella patens
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Chondrus crispus
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-
Galdieria sulphuraria
-------
Cyanidioschyzon merolae strain 10D
-------
-
Homo sapiens
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Ciona savignyi
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-
-
Drosophila melanogaster
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Caenorhabditis elegans
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Saccharomyces cerevisiae S288c