Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
------------------------------------------------------------
-
Ostreococcus lucimarinus (Ostreococcus lucimarinus CCE9901)
-------
Chlamydomonas reinhardtii (Chlamydomonas reinhardtii strain CC-503 cw92 mt+)
-------
-
Sorghum bicolor (Sorghum bicolor strain BTx623)
-------------------------------
----
Zea mays (Zea mays strain B73)
--------------
Setaria italica (Setaria italica strain Yugu1)
----------
-
Oryza rufipogon (Oryza rufipogon strain W1943)
----------
----
Oryza sativa Japonica Group (Oryza sativa Japonica Group strain Nipponbare)
----------
----
-
Oryza sativa Indica Group (Oryza sativa Indica Group strain 93-11)
----------------
Oryza nivara (Oryza nivara strain IRGC:100897)
-----------------
-
Oryza barthii (Oryza barthii strain IRGC:105608)
----------
----
Oryza glaberrima (Oryza glaberrima strain CG14)
-------
-------------------
Oryza meridionalis (Oryza meridionalis strain OR44 (W2112))
-------------
----------------
Oryza glumipatula (Oryza glumipatula)
-------------
-------------------
Oryza longistaminata (Oryza longistaminata)
-------------
-----------------------
Oryza punctata (Oryza punctata strain IRGC:105690)
---------------------------------------
Oryza brachyantha (Oryza brachyantha strain IRGC:101232)
----------------------------------------
Leersia perrieri (Leersia perrieri strain IRGC:105164)
----------------
-
Triticum aestivum (component A) (Triticum aestivum strain Chinese spring (component A))
----------------
----
Triticum dicoccoides (component A) (Triticum dicoccoides strain Zavitan (Atlit2015) (component A))
-----------------------
Triticum urartu (Triticum urartu strain G1812 (PI428198))
-------
----
--------
-
Triticum aestivum (Triticum aestivum strain Chinese spring)
-------------------
Triticum dicoccoides (Triticum dicoccoides strain Zavitan (Atlit2015))
----------------
-----
-
Triticum aestivum (component B) (Triticum aestivum strain Chinese spring (component B))
----------------------
Triticum dicoccoides (component B) (Triticum dicoccoides strain Zavitan (Atlit2015) (component B))
----------------
--------
-
Aegilops tauschii (Aegilops tauschii strain AL8/78)
-------
-------------------
Triticum aestivum (component D) (Triticum aestivum strain Chinese spring (component D))
------------------------
---------------
Triticum aestivum (component U) (Triticum aestivum strain Chinese spring (component U))
----
----------------------------
Hordeum vulgare (Hordeum vulgare subsp. vulgare strain Morex)
-----------------------------------
Brachypodium distachyon (Brachypodium distachyon strain Bd21)
----------------------------------------------------
Musa acuminata (Musa acuminata subsp. malaccensis strain DH-Pahang)
-----------------------------------------------------
Dioscorea rotundata (Dioscorea rotundata strain TDr96_F1)
-----------------
-
Daucus carota (Daucus carota subsp. sativus strain DH1)
---------------------
----
Helianthus annuus (Helianthus annuus strain XRQ/B)
-------------------
-
Solanum tuberosum (Solanum tuberosum strain DM 1-3 516 R44)
----------
-------
----
Solanum lycopersicum (Solanum lycopersicum strain Heinz 1706)
-----------------------
Nicotiana attenuata (Nicotiana attenuata strain UT)
-------------------
-
Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata strain MN47)
-------------------
----
Arabidopsis thaliana (Arabidopsis thaliana strain Columbia)
-------------------------
Brassica rapa (Brassica rapa strain Chiifu-401-42)
-----------------------
----
-
Brassica oleracea (Brassica oleracea var. oleracea strain TO1000)
-------------------------
Brassica napus (Brassica napus strain Darmor-bzh)
-------------------------
Gossypium raimondii (Gossypium raimondii strain CMD 10)
--------------------------
-
Corchorus capsularis (Corchorus capsularis strain CVL-1)
----------------------
Theobroma cacao (Theobroma cacao strain Matina 1-6)
---------------------------------
---------------
-
Populus trichocarpa (Populus trichocarpa strain Nisqually 1)
----------
-------------
Manihot esculenta (Manihot esculenta strain AM560-2)
-
--------------------------
-
Trifolium pratense (Trifolium pratense strain Milvus B)
----------------
----------
Medicago truncatula (Medicago truncatula strain A17)
----------------------------
-
Vigna radiata (Vigna radiata var. radiata strain VC1973A)
-------------------
-
-
----
Vigna angularis (Vigna angularis strain Jingnong 6)
--------------------------------
Phaseolus vulgaris (Phaseolus vulgaris strain G19833)
----------
-----------------------
Glycine max (Glycine max strain Williams 82)
------------------------------------
Lupinus angustifolius (Lupinus angustifolius strain Tanjil)
-------------------------------------
Cucumis sativus (Cucumis sativus strain 9930)
-------------------------------------
Prunus persica (Prunus persica strain Lovell)
-------
-----------------------------
Vitis vinifera (Vitis vinifera strain PN40024)
------------------------------------
Beta vulgaris (Beta vulgaris subsp. vulgaris strain KWS2320 DH)
-------------------------------------------------------------
Amborella trichopoda (Amborella trichopoda)
--------------------------------------------------------------
Selaginella moellendorffii (Selaginella moellendorffii)
---------------------------------------------------------------
Physcomitrella patens (Physcomitrella patens strain Gransden 2004)
-------
-
Galdieria sulphuraria (Galdieria sulphuraria strain 074W)
------------------------------------------------------------
----
Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D)
-----------
Chondrus crispus (Chondrus crispus strain Stackhouse)
-------
-
Caenorhabditis elegans (Caenorhabditis elegans strain N2)
-------
----
Fruitfly (Drosophila melanogaster)
--------------------------------------------------------
----
-
C.savignyi (Ciona savignyi)
-------
Human (Homo sapiens)
------------
Saccharomyces cerevisiae (Saccharomyces cerevisiae strain S288C)