Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Ostreococcus lucimarinus CCE9901
-------
Chlamydomonas reinhardtii
-------
-
Sorghum bicolor
-------------------------------
----
Zea mays
--------------
Setaria italica
----------
-
Triticum aestivum (component A)
-------------
Triticum urartu
----------
-
Aegilops tauschii
----------
----
Triticum aestivum (component D)
-----------------
Triticum aestivum (component U)
-------
----
--------
Triticum aestivum (component B)
-------------------------
-----------
Triticum aestivum
---------------------------
Hordeum vulgare subsp. vulgare
----------------------------
Brachypodium distachyon
----------------
-
Oryza rufipogon
----------------
----
Oryza sativa Japonica Group
----------------
----
-
Oryza sativa Indica Group
----------
----------
Oryza nivara
-------
--------------
-
Oryza glaberrima
----------------
----
Oryza barthii
----
----------------------------
Oryza glumipatula
-------------------
----------------
Oryza longistaminata
-------------------
-------------------
Oryza meridionalis
----------------
-----------------------
Oryza punctata
---------------------------------------
Oryza brachyantha
----------------------------------------
Leersia perrieri
-------------------------------------------------
Musa acuminata subsp. malaccensis
-------------------------
-
Solanum tuberosum
----------------
Solanum lycopersicum
----------------
-
Arabidopsis lyrata subsp. lyrata
----------
-------
----
Arabidopsis thaliana
-------------------------
Brassica oleracea var. oleracea
-------------------
----
-
Brassica napus
----
----------------------
Brassica rapa subsp. pekinensis
------------------------------------
---------------
Theobroma cacao
-------------------------
-
Medicago truncatula
-------------
-------
----
----
Trifolium pratense
-------------------------
--------
Glycine max
------------------------------------
Populus trichocarpa
------------------------------------
Prunus persica
----------
-------------------------
Vitis vinifera
-
--------------------------------
Beta vulgaris subsp. vulgaris
--------------------------------------------------------
Amborella trichopoda
---------------------------------------------------------
Selaginella moellendorffii
----------------------------------------------------------
Physcomitrella patens
----------
Cyanidioschyzon merolae strain 10D
-----------------------------------------------------------
-
Chondrus crispus
-------
Galdieria sulphuraria
-------
-
Caenorhabditis elegans
----------
Drosophila melanogaster
--------------------------------------------------------
-
-
Homo sapiens
-------
Ciona savignyi
--------
Saccharomyces cerevisiae S288c