Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Triticum aestivum (component A)
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Triticum urartu
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-
Triticum aestivum (component D)
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Aegilops tauschii
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Triticum aestivum (component U)
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Triticum aestivum
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Triticum aestivum (component B)
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Hordeum vulgare subsp. vulgare
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Brachypodium distachyon
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Oryza sativa Indica Group
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Oryza nivara
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Oryza sativa Japonica Group
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Oryza rufipogon
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Oryza barthii
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Oryza glaberrima
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Oryza glumipatula
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Oryza longistaminata
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Oryza meridionalis
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Oryza punctata
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Oryza brachyantha
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Leersia perrieri
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Sorghum bicolor
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Zea mays
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Setaria italica
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Musa acuminata subsp. malaccensis
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Solanum tuberosum
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Solanum lycopersicum
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Arabidopsis thaliana
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Arabidopsis lyrata subsp. lyrata
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Brassica oleracea var. oleracea
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Brassica napus
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Brassica rapa subsp. pekinensis
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Theobroma cacao
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Trifolium pratense
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Medicago truncatula
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Glycine max
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Populus trichocarpa
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Prunus persica
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Vitis vinifera
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Beta vulgaris subsp. vulgaris
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Amborella trichopoda
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Selaginella moellendorffii
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Physcomitrella patens
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Chlamydomonas reinhardtii
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Ostreococcus lucimarinus CCE9901
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Galdieria sulphuraria
-
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Chondrus crispus
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Cyanidioschyzon merolae strain 10D
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Ciona savignyi
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Homo sapiens
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Caenorhabditis elegans
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Drosophila melanogaster
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Saccharomyces cerevisiae S288c