Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
----
-
Zea mays (Zea mays)
----------------------------
----
Sorghum bicolor (Sorghum bicolor)
-----------
Setaria italica (Setaria italica)
-------
-
Triticum urartu (Triticum urartu)
----------
Triticum aestivum (Triticum aestivum Chinese Spring (component A))
-------
-
Aegilops tauschii (Aegilops tauschii)
-------
----
Triticum aestivum (Triticum aestivum Chinese Spring (component D))
--------------
Triticum aestivum (Triticum aestivum Chinese Spring (component U))
----
----
--------
Triticum aestivum (Triticum aestivum Chinese Spring)
----------------------
-----------
Triticum aestivum (Triticum aestivum Chinese Spring (component B))
------------------------
Hordeum vulgare (Hordeum vulgare subsp. vulgare)
-------------------------
Brachypodium distachyon (Brachypodium distachyon (L.) Beauv)
-------------
-
Oryza nivara (Oryza nivara)
-------------
----
Oryza sativa Indica (Oryza sativa Indica Group 93-11)
-------------
----
-
Oryza sativa Japonica (Oryza sativa Japonica Group)
-------
----------
Oryza rufipogon (Oryza rufipogon)
----
--------------
-
Oryza glaberrima (Oryza glaberrima CG14)
-------------
----
Oryza barthii (Oryza barthii)
----------------------------
Oryza longistaminata (Oryza longistaminata)
-------------
----------------
Oryza glumaepatula (Oryza glumipatula)
-------------
-------------------
Oryza meridionalis (Oryza meridionalis)
----------
-----------------------
Oryza punctata (Oryza punctata)
---------------------------------
Oryza brachyantha (Oryza brachyantha)
----------------------------------
Leersia perrieri (Leersia perrieri)
-------------------------------------------
Musa acuminata (Musa acuminata subsp. malaccensis DH-Pahang)
-------------------
-
Solanum lycopersicum (Solanum lycopersicum)
----------
Solanum tuberosum (Solanum tuberosum)
----------
-
Arabidopsis thaliana (Arabidopsis thaliana)
----
-------
----
Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata)
-------------------
Brassica oleracea (Brassica oleracea var. oleracea TO1000)
-------------
----
-
Brassica napus (Brassica napus)
-------------------
Brassica rapa (Brassica rapa subsp. pekinensis)
---------------------------
---------------
Theobroma cacao (Theobroma cacao)
----------------
-
Medicago truncatula (Medicago truncatula A17)
----
-------
----
----
Trifolium pratense (Trifolium pratense)
----------------
--------
Glycine max (Glycine max var. Williams 82)
---------------------------
Prunus persica (Prunus persica)
---------------------------
Populus trichocarpa (Populus trichocarpa)
----
-------------------------
Vitis vinifera (Vitis vinifera PN40024)
--------------------------------
Beta vulgaris subsp. vulgaris (Beta vulgaris subsp. vulgaris)
----
--------------------------------------------------
Amborella trichopoda (Amborella trichopoda)
---------------------------------------------------------
Selaginella moellendorffii (Selaginella moellendorffii)
----------------------------------------------------------
Physcomitrella patens (Physcomitrella patens ssp. patens str. Gransden 2004)
----
----------------------------------------------------
-
Ostreococcus lucimarinus (Ostreococcus lucimarinus CCE9901)
----------
Chlamydomonas reinhardtii (Chlamydomonas reinhardtii CC-503 cw92 mt+)
----------
Galdieria sulphuraria (Galdieria sulphuraria 074W)
-
--------------------------------------------------------
-
Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D)
-------
Chondrus crispus (Chondrus crispus PCG)
-------
-
Drosophila melanogaster (Drosophila melanogaster)
----------
Caenorhabditis elegans (Caenorhabditis elegans N2)
--------------------------------------------------------
-
-
Human (Homo sapiens)
-------
C.savignyi (Ciona savignyi)
--------
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288c S288C)