The Ensembl Genomes FTP Server

Detailed information about the available data and file formats can be found here.

The data can also be downloaded directly from the Ensembl Plants FTP server.

Multi-species data

DatabaseMySQLTSVEMF
Pan_compara Multi-speciesMySQLTSVEMF
Plants Multi-speciesMySQLTSVEMF
Ensembl MartMySQL

Single species data

SpeciesDNACDNAProteinEMBLGENBANKMySQLTSVGTFGFF3GVFVCF
Aegilops tauschiiFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Amborella trichopodaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Arabidopsis lyrataFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Arabidopsis thalianaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(funcgen)
MySQL(variation)
TSVGTFGFF3GVFVCF
Brachypodium distachyonFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
MySQL(variation)
TSVGTFGFF3GVFVCF
Brassica rapaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
MySQL(funcgen)
TSVGTFGFF3
Chlamydomonas reinhardtiiFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Cyanidioschyzon merolaeFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Glycine maxFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Hordeum vulgareFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
MySQL(funcgen)
MySQL(variation)
TSVGTFGFF3GVFVCF
Medicago truncatulaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Musa acuminataFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Oryza barthiiFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Oryza brachyanthaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Oryza glaberrimaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(variation)
TSVGTFGFF3GVFVCF
Oryza glumaepatulaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Oryza indicaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(funcgen)
MySQL(variation)
TSVGTFGFF3GVFVCF
Oryza meridionalisFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Oryza nivaraFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Oryza punctataFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Oryza sativaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
MySQL(funcgen)
MySQL(variation)
TSVGTFGFF3GVFVCF
Physcomitrella patensFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Populus trichocarpaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(funcgen)
TSVGTFGFF3
Prunus persicaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Selaginella moellendorffiiFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3
Setaria italicaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Solanum lycopersicumFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
MySQL(funcgen)
TSVGTFGFF3
Solanum tuberosumFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Sorghum bicolorFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(variation)
TSVGTFGFF3GVFVCF
Triticum aestivumFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Triticum urartuFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3
Vitis viniferaFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(funcgen)
MySQL(variation)
TSVGTFGFF3GVFVCF
Zea maysFASTA (DNA)FASTA (cDNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
MySQL(funcgen)
MySQL(variation)
TSVGTFGFF3GVFVCF

Metadata

Detailed metadata on the genomes provided by Ensembl Genomes is available from the FTP site in TSV, JSON and XML formats (format details).

Ensembl Plants: TSV | JSON | XML

Ensembl Genomes (all divisions): TSV | JSON | XML