Genomic alignments and syntenies

Information about the analyses is available on http://www.ensemblgenomes.org

Available alignments

  • Click on a species name to expand/collapse its alignment list
  • Click on a analysis name to see available statistics

Toggle All Toggle All or click a species names to expand/collapse its alignment list

Aegilops tauschii 2 alignments    
Oryza sativa Japonica
  LASTZ_NET | example stats
Triticum urartu
  ATAC | example stats
Amborella trichopoda 2 alignments    
Arabidopsis thaliana
  TRANSLATED_BLAT_NET | example stats
Oryza sativa Japonica
  TRANSLATED_BLAT_NET | example stats
Arabidopsis lyrata 3 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Arabidopsis thaliana 25 alignments    
Amborella trichopoda
  TRANSLATED_BLAT_NET | example stats
Arabidopsis lyrata
  LASTZ_NET | example stats
Brachypodium distachyon
  LASTZ_NET | example stats
Brassica oleracea
  LASTZ_NET | example stats
Brassica rapa
  LASTZ_NET | example stats
Chlamydomonas reinhardtii
  LASTZ_NET | example stats
Cyanidioschyzon merolae
  LASTZ_NET | example stats
Glycine max
  LASTZ_NET | example stats
Medicago truncatula
  LASTZ_NET | example stats
Musa acuminata
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Physcomitrella patens
  LASTZ_NET | example stats
Populus trichocarpa
  LASTZ_NET | example stats
Prunus persica
  LASTZ_NET | example stats
Selaginella moellendorffii
  LASTZ_NET | example stats
Setaria italica
  LASTZ_NET | example stats
Solanum lycopersicum
  LASTZ_NET | example stats
Theobroma cacao
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Zea mays
  LASTZ_NET | example stats
Brachypodium distachyon 6 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Hordeum vulgare
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Triticum aestivum
  LASTZ_NET | example stats
Zea mays
  LASTZ_NET | example stats
Brassica oleracea 2 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Brassica rapa
  LASTZ_NET | example stats
Brassica rapa 4 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Brassica oleracea
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Chlamydomonas reinhardtii 2 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Cyanidioschyzon merolae 2 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Glycine max 4 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Medicago truncatula
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Hordeum vulgare 2 alignments    
Brachypodium distachyon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Leersia perrieri 9 alignments    
Oryza barthii
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Medicago truncatula 4 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Glycine max
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Musa acuminata 3 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Zea mays
  LASTZ_NET | example stats
Oryza barthii 11 alignments    
Leersia perrieri
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza brachyantha 11 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza barthii
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza glaberrima 12 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Leersia perrieri
  LASTZ_NET | example stats
Oryza barthii
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza glumaepatula 11 alignments    
Leersia perrieri
  LASTZ_NET | example stats
Oryza barthii
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza longistaminata 12 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Leersia perrieri
  LASTZ_NET | example stats
Oryza barthii
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza meridionalis 12 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Leersia perrieri
  LASTZ_NET | example stats
Oryza barthii
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza nivara 11 alignments    
Leersia perrieri
  LASTZ_NET | example stats
Oryza barthii
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza punctata 10 alignments    
Oryza barthii
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza rufipogon 11 alignments    
Leersia perrieri
  LASTZ_NET | example stats
Oryza barthii
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza sativa Indica 13 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Brachypodium distachyon
  LASTZ_NET | example stats
Leersia perrieri
  LASTZ_NET | example stats
Oryza barthii
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Oryza sativa Japonica 35 alignments    
Aegilops tauschii
  LASTZ_NET | example stats
Amborella trichopoda
  TRANSLATED_BLAT_NET | example stats
Arabidopsis lyrata
  LASTZ_NET | example stats
Arabidopsis thaliana
  LASTZ_NET | example stats
Brachypodium distachyon
  LASTZ_NET | example stats
Brassica rapa
  LASTZ_NET | example stats
Chlamydomonas reinhardtii
  LASTZ_NET | example stats
Cyanidioschyzon merolae
  LASTZ_NET | example stats
Glycine max
  LASTZ_NET | example stats
Hordeum vulgare
  LASTZ_NET | example stats
Leersia perrieri
  LASTZ_NET | example stats
Medicago truncatula
  LASTZ_NET | example stats
Musa acuminata
  LASTZ_NET | example stats
Oryza barthii
  LASTZ_NET | example stats
Oryza brachyantha
  LASTZ_NET | example stats
Oryza glaberrima
  LASTZ_NET | example stats
Oryza glumaepatula
  LASTZ_NET | example stats
Oryza sativa Indica
  LASTZ_NET | example stats
Oryza longistaminata
  LASTZ_NET | example stats
Oryza meridionalis
  LASTZ_NET | example stats
Oryza nivara
  LASTZ_NET | example stats
Oryza punctata
  LASTZ_NET | example stats
Oryza rufipogon
  LASTZ_NET | example stats
Physcomitrella patens
  LASTZ_NET | example stats
Populus trichocarpa
  LASTZ_NET | example stats
Prunus persica
  LASTZ_NET | example stats
Selaginella moellendorffii
  LASTZ_NET | example stats
Setaria italica
  LASTZ_NET | example stats
Solanum lycopersicum
  LASTZ_NET | example stats
Solanum tuberosum
  LASTZ_NET | example stats
Theobroma cacao
  LASTZ_NET | example stats
Triticum aestivum
  LASTZ_NET | example stats
Triticum urartu
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Zea mays
  LASTZ_NET | example stats
Physcomitrella patens 3 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Zea mays
  LASTZ_NET | example stats
Populus trichocarpa 3 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Prunus persica 3 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Selaginella moellendorffii 2 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Setaria italica 3 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Zea mays
  LASTZ_NET | example stats
Solanum lycopersicum 4 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Solanum tuberosum
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Solanum tuberosum 3 alignments    
Oryza sativa Japonica
  LASTZ_NET | example stats
Solanum lycopersicum
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Theobroma cacao 3 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats
Triticum aestivum 2 alignments    
Brachypodium distachyon
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Triticum urartu 2 alignments    
Aegilops tauschii
  ATAC | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Vitis vinifera 12 alignments    
Arabidopsis lyrata
  LASTZ_NET | example stats
Arabidopsis thaliana
  LASTZ_NET | example stats
Brassica rapa
  LASTZ_NET | example stats
Glycine max
  LASTZ_NET | example stats
Medicago truncatula
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Populus trichocarpa
  LASTZ_NET | example stats
Prunus persica
  LASTZ_NET | example stats
Solanum lycopersicum
  LASTZ_NET | example stats
Solanum tuberosum
  LASTZ_NET | example stats
Theobroma cacao
  LASTZ_NET | example stats
Zea mays
  LASTZ_NET | example stats
Zea mays 7 alignments    
Arabidopsis thaliana
  LASTZ_NET | example stats
Brachypodium distachyon
  LASTZ_NET | example stats
Musa acuminata
  LASTZ_NET | example stats
Oryza sativa Japonica
  LASTZ_NET | example stats
Physcomitrella patens
  LASTZ_NET | example stats
Setaria italica
  LASTZ_NET | example stats
Vitis vinifera
  LASTZ_NET | example stats