Transcript: Zm00001eb000540_T001

Description

Zm00001e000052

Location

Chromosome 1: 2,224,430-2,232,174 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 5 domains and features and is associated with 411 variant alleles.

Gene

This transcript is a product of gene Zm00001eb000540 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	Flags
-	Zm00001eb000540_T001	2450	590aa	Zm00001eb000540_P001	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D6JK92 A0A1D6JK94 A0A1D6JK96 A0A317Y5B9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	Zm00001eb000540_T003	2678	455aa	Zm00001eb000540_P003	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D6JK95	-
-	Zm00001eb000540_T002	2225	462aa	Zm00001eb000540_P002	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D6JK93	-
-	Zm00001eb000540_T004	1934	480aa	Zm00001eb000540_P004	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,450 bps, Translation length: 590 residues

Version

Zm00001eb000540_T001

Type

Protein coding

Annotation Method

Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.

Transcript: Zm00001eb000540_T001

Summary

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Transcript: Zm00001eb000540_T001

Summary

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