Solanum tuberosum (SolTub_3.0)
Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006006]

Location
About this transcript

This transcript has 5 exons and is annotated with 8 domains and features.

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-PGSC0003DMT4000154043310705aa
 
Protein coding
M1A5Z3 Ensembl Canonical
-PGSC0003DMT4000154033566266aa
 
Protein coding
M1A5Z2 -
-PGSC0003DMT4000154062624474aa
 
Protein coding
M1A5Z4 -
Codons
  • Alternating codons
  • Alternating codons
Exons
  • An exon
  • Another exon
Variants
  • loading
Other
  • UTR
Markup
  • loading
                                                                          
     1 AAAAGCCCCAAAAATTTTACCAAACCCTAATTTCTCACTCCGAAACAGACGTTCTTCAAG     60
       ............................................................       
       ............................................................       

                                                                          
    61 ACTTTTTCCCTCCTCTCCTCTTCTTCTTTTCCTCTTTCTCTCTCAACAAAAATACAACTC    120
       ............................................................       
       ............................................................       

                                                                          
   121 CTCTTTCCCTCATCGTCTCTGTATCTCTCTTCGCTTCTCTATGGAATTTTGTTTATTGAT    180
       ............................................................       
       ............................................................       

                                                                          
   181 AACATAGTAGACGTCCGATCTGGGAGTATTCGGTTCAGATCTGTGACGAGGATTGAGATT    240
       ............................................................       
       ............................................................       

                                                                          
   241 TCCGACCTCACGCGCCGAGATCTGGGTGATACGCGCCGAGATCAGTTTAAAGGAGGTATG    300
       ............................................................       
       ............................................................       

                                                                          
   301 GTAGTGAATGGTAGGCCGATGAAGAGGTTGAAGAGGAGAGTAACGGCAGACCTCAACGAT    360
       ............................................................       
       ............................................................       

                                                                          
   361 TTCCTTACCTTTCCCGACGACGGTAATACCGCCGGTACGGGACCGTTCAGGACGACGGTG    420
       ............................................................       
       ............................................................       

                                                                          
   421 AAGGAGTTTTTATCGAAACATGCGCTTTTGCCGCCGCCTTCTTCGTTGTTTCCTCACCTT    480
       ............................................................       
       ............................................................       

                                                                          
   481 CTGACGTGGCAGATCCTCTTCCGCGTCGGAGACCTCACTGACGGCGACGGTAACGGCAAC    540
       ............................................................       
       ............................................................       

                                                                          
   541 GGCGACTCTTCTCCGTCTGTTGTCTGCCTCGATGTTATCGAAGAAGACGTCGCCAGATGT    600
       ............................................................       
       ............................................................       

                                                                          
   601 AGATCCGTTTATTGCGACCAGTGCCGAGTCGTTGGTTGGAGCAGTAATCCAGTTTGTGCA    660
       ............................................................       
       ............................................................       

                                                                          
   661 AAGCGTTTCCATTTTATTATTAAGGCTGATGGAAACTCAGTTGGGGGTTATAACAAATCC    720
       ............................................................       
       ............................................................       

                                                                          
   721 TGTGCTGGGTGTGGTGAAGCCCTTCACTTATCCGAGGCTAGGTGCAAGTCATGCAATCAT    780
       ............................................................       
       ............................................................       

                                                                          
   781 GTCATGACCACAGAAGATGTTGAAGATTGGATGTATCATCAGTTAGAGGATACCAGTCAT    840
       ............................................................       
       ............................................................       

                                                                          
   841 CTTCTGCATGGTGTGATTCATGCCAATGGCTATGGACATCTTCTCAGGGTAAACGGTAGA    900
       ............................................................       
       ............................................................       

                                                                          
   901 GAAGGTGGATCCAGGGTGCTTTCTGGAAGTCATATAATGAATTTCTGGGATAGGCTCTGT    960
       ............................................................       
       ............................................................       

                                                                          
   961 AAAGTCCTTGGAGCAAGGTAAGCATAATTTGTATTAGATGTTATGTCGTTGGAATAATAA   1020
       ............................................................       
       ............................................................       

                                                                          
  1021 AATTTGACATGTTACCCCAAGTACTGAAGGCAATATTCTATAGTTTGGTTCTCCAATGAG   1080
       ............................................................       
       ............................................................       

                                                                          
  1081 CTATATTTGATGATTTAGTCGTGTATTTCTGTATGATCAGAAAAATCAGCGTGATGGATG   1140
       ............................................................       
       ............................................................       

                                                                          
  1141 TTTCAAAGAAGTATGGTTTGGAATTACGCCTAATGCATGCCATCACAAAAGGTCACCCAT   1200
       ............................................................       
       ............................................................       

                                                                          
  1201 GGTATGGTAAATGGGATTATCAGTTTGGCGCTGGTAGTTTTGCTCTGACTCAAGATTCTT   1260
       ............................................................       
       ............................................................       

                                                                          
  1261 ATAGACAAGCTGTAGAGAACCTTTCTTCTCTGCCCTTGACCATCTTTCTATCTCAAGGAC   1320
       ............................................................       
       ............................................................       

                                                                          
  1321 GGAAGCCTCGCACTCGTCTGCAGGACTTGATTTCATTTTATCAGTCCTTGTCAGATAGTG   1380
       ............................................................       
       ............................................................       

                                                                          
  1381 AACTTGTAAATATTAGAGACCTTTTTCTTTTCTTAACTAGTTCAATCCGTGATGCCCATA   1440
       ............................................................       
       ............................................................       

                                                                          
  1441 AACCTGGCTCAGGAGCTGATGAGGTCACCTGTAAGAAGCGTAAAACTTGCAACTCCAAGG   1500
       ............................................................       
       ............................................................       

                                                                          
  1501 TCTTATGTGCATGGACCAGTACTGACATTTTACGTGTTGAAGAAGCAATGTTTAGAGTAC   1560
       ............................................................       
       ............................................................       

                                                                          
  1561 TACGGGCTGTCTCTGGGCCCAATTGGGTGAGCTGGCGTGCTCTTAGAGGTGCTGTGTGTA   1620
       ............................................................       
       ............................................................       

                                                                          
  1621 AAGCGGGTCCTCCTGAACTCCTTGATTATTGCCTAAAGGCACTCCATGGAAAGCAGGCAG   1680
       ............................................................       
       ............................................................       

                                                                          
  1681 CTGACGGACTGGTTGTCAATTCCCGCAGCGTTTCTGGTTCTGGTGCTATGGAGTATAAGT   1740
       ............................................................       
       ............................................................       

                                                                          
  1741 CAGTAAATCCATTCTTCTTTGAGAACTCAATATTTACAATTTTGTATAAGTCACACTGTG   1800
       ............................................................       
       ............................................................       

                                                                          
  1801 TGCATTATAGTTTTTTTGCTTTCTCACTGATTTTTCTCTGACTTAATGCAGAATTGAGCG   1860
       ............................................................       
       ............................................................       

                                                                          
  1861 TTGCAACTCAATGGTTAATGTGAATACAAAAGAGAATGGATTGCCTTGTACTCCGAACCT   1920
       ..........ATGGTTAATGTGAATACAAAAGAGAATGGATTGCCTTGTACTCCGAACCT     50
       ..........-M--V--N--V--N--T--K--E--N--G--L--P--C--T--P--N--L     17

                                                                          
  1921 CCCATCTGAGGAACATCTGCGTCGAGATCTGAAGTACTTGTACGATTGCATGCTAAACCC   1980
    51 CCCATCTGAGGAACATCTGCGTCGAGATCTGAAGTACTTGTACGATTGCATGCTAAACCC    110
    17 --P--S--E--E--H--L--R--R--D--L--K--Y--L--Y--D--C--M--L--N--P     37

                                                                          
  1981 ATCGACAATGTCTAATCATGTTCCCTTAATCAAAAGGGTAGTGGCAGTTGACTCTGCTAC   2040
   111 ATCGACAATGTCTAATCATGTTCCCTTAATCAAAAGGGTAGTGGCAGTTGACTCTGCTAC    170
    37 --S--T--M--S--N--H--V--P--L--I--K--R--V--V--A--V--D--S--A--T     57

                                                                          
  2041 TACCGTTCTTGATTGCAAGCAATTTTTGAAGGTATATCAGCCTGAAAGATTCTTGCCTAT   2100
   171 TACCGTTCTTGATTGCAAGCAATTTTTGAAGGTATATCAGCCTGAAAGATTCTTGCCTAT    230
    57 --T--V--L--D--C--K--Q--F--L--K--V--Y--Q--P--E--R--F--L--P--I     77

                                                                          
  2101 CCCAAAATCAGATGCAATCCAAGTACTATGTGAGGTGGACATCATGGAACAATCTGATGT   2160
   231 CCCAAAATCAGATGCAATCCAAGTACTATGTGAGGTGGACATCATGGAACAATCTGATGT    290
    77 --P--K--S--D--A--I--Q--V--L--C--E--V--D--I--M--E--Q--S--D--V     97

                                                                          
  2161 ACATTCCAGAAACCCTCCTCCGGAATTATTGATTCTCCCCTCGGATGCTACCATTTCTGA   2220
   291 ACATTCCAGAAACCCTCCTCCGGAATTATTGATTCTCCCCTCGGATGCTACCATTTCTGA    350
    97 --H--S--R--N--P--P--P--E--L--L--I--L--P--S--D--A--T--I--S--D    117

                                                                          
  2221 CTTGAAGGCAGAGGCATCAAGGACATTTCAAGATGTATACTTGATGTTCAGAAGATTCCA   2280
   351 CTTGAAGGCAGAGGCATCAAGGACATTTCAAGATGTATACTTGATGTTCAGAAGATTCCA    410
   117 --L--K--A--E--A--S--R--T--F--Q--D--V--Y--L--M--F--R--R--F--Q    137

                                                                          
  2281 AGCTGATGAGCTAGTTGGATATGGTGGTGTGAATGAATCTACTCAGGTCAAACTCCTTCT   2340
   411 AGCTGATGAGCTAGTTGGATATGGTGGTGTGAATGAATCTACTCAGGTCAAACTCCTTCT    470
   137 --A--D--E--L--V--G--Y--G--G--V--N--E--S--T--Q--V--K--L--L--L    157

                                                                          
  2341 AGGATCTGCTGAATTTGTTACAGTCAGAGGAAAATTCTTGGGGAAAAATGGGCTGAGTAA   2400
   471 AGGATCTGCTGAATTTGTTACAGTCAGAGGAAAATTCTTGGGGAAAAATGGGCTGAGTAA    530
   157 --G--S--A--E--F--V--T--V--R--G--K--F--L--G--K--N--G--L--S--K    177

                                                                          
  2401 GTATAGAATGGAAAGAGGAATGGAGAGATGGACTGTAGATTGCTTCTGTGGAGCAAAGGA   2460
   531 GTATAGAATGGAAAGAGGAATGGAGAGATGGACTGTAGATTGCTTCTGTGGAGCAAAGGA    590
   177 --Y--R--M--E--R--G--M--E--R--W--T--V--D--C--F--C--G--A--K--D    197

                                                                          
  2461 TGATGACGGAGAGAGGATGTTAGCTTGTGATGTATGCAGTGTTTGGCAGCACACCAGATG   2520
   591 TGATGACGGAGAGAGGATGTTAGCTTGTGATGTATGCAGTGTTTGGCAGCACACCAGATG    650
   197 --D--D--G--E--R--M--L--A--C--D--V--C--S--V--W--Q--H--T--R--C    217

                                                                          
  2521 TGCCGGTATCCCCGACTTGGATGCTGTTCCTGCCAAGTTCATTTGTCTTAGGTGCAGATG   2580
   651 TGCCGGTATCCCCGACTTGGATGCTGTTCCTGCCAAGTTCATTTGTCTTAGGTGCAGATG    710
   217 --A--G--I--P--D--L--D--A--V--P--A--K--F--I--C--L--R--C--R--C    237

                                                                          
  2581 TCTTAGTAAGACTATGAATACAAGCGGTAATTGTAAGGATGAATCAGTTGCTGGTGTGGG   2640
   711 TCTTAGTAAGACTATGAATACAAGCGGTAATTGTAAGGATGAATCAGTTGCTGGTGTGGG    770
   237 --L--S--K--T--M--N--T--S--G--N--C--K--D--E--S--V--A--G--V--G    257

                                                                          
  2641 ATTAGGGAAGAACCTGGCTCATGTTGTCTAGAGCGTGCTGGGATTTTTAATAATGCTGTA   2700
   771 ATTAGGGAAGAACCTGGCTCATGTTGTCTAG.............................    801
   257 --L--G--K--N--L--A--H--V--V--*-.............................    266

                                                                          
  2701 ATATGTGGGTTCAATTATTGAATTGAGACCTGATCAAGCATATAATGTAATACCAAGTCT   2760
       ............................................................       
       ............................................................       

                                                                          
  2761 TAATTATGGCTTTGGAGAGTAATGGTGTATGAGATTGGAGGAAGGCTCTATTTGAGTAAA   2820
       ............................................................       
       ............................................................       

                                                                          
  2821 TGGGGGTCTCAGTTCTTGCTTGCATCATTGGTGCTGAGAATATTTTGCAGAATCTAGGAT   2880
       ............................................................       
       ............................................................       

                                                                          
  2881 GTTCATGGGTGAAATTTTGAACTACCAGTCGAACTTTTAAAACTTGGAAGATCTAAGATG   2940
       ............................................................       
       ............................................................       

                                                                          
  2941 TTGTGATCAGCCAACTCCCTCCTAATCAAAGATGATTTTACGATGTCTGGACTTCTATAT   3000
       ............................................................       
       ............................................................       

                                                                          
  3001 GTGATTTTTGAAATTTTGCTGGTGACAACACAATTCATCTTCTTCCTGAGTTGTGTTTCC   3060
       ............................................................       
       ............................................................       

                                                                          
  3061 AGGATACAGGCTAGCATGCTAATGAGGACTAGCCTGTGCTGCAATTAACTGAATTTAGGC   3120
       ............................................................       
       ............................................................       

                                                                          
  3121 AAAGATAAGCATACAGGGAGGGTTTATCAAGTTTTTCAACAAAGCGTCATTTGGCTTCTT   3180
       ............................................................       
       ............................................................       

                                                                          
  3181 ACATTCCAATGTGGAGACAAACAAGTGCTGTCTGAGCGTTGATAGAGTTCACAAGATACG   3240
       ............................................................       
       ............................................................       

                                                                          
  3241 TGCAGAACAATCGTGCTGATAATGTATATAACTCCTTTTCTTTTTTAAATACCCTCGATG   3300
       ............................................................       
       ............................................................       

                                                                          
  3301 TCAAAGATGTGGCAAGCTAAAGAATGTAAGTTTGCTTTACATTCGAGGAGTATTTTTACA   3360
       ............................................................       
       ............................................................       

                                                                          
  3361 ATCGTGTGTTGGTTGAGACGTGTGTATCTGTGTGAATTTCTAGCCATATTTACGCAATGA   3420
       ............................................................       
       ............................................................       

                                                                          
  3421 GGACTAGCCTCTACTCAAATGTCATTTCTCTCTATTTAATGGAATTAGAAACAGTGGAAC   3480
       ............................................................       
       ............................................................       

                                                                          
  3481 AATGCTTTTTCCTTATATTCAGAAATGTACATTATGATGGTGCTTATGTTGCCTTCATAA   3540
       ............................................................       
       ............................................................       

                                                                          
  3541 ATTTCAAGTCTTGTTTAGGGTTTAAC                                     3566
       ..........................                                         
       ..........................