About Oryza sativa Japonica

Oryza sativa Japonica (rice) is the staple food for 2.5 billion people. It is the grain with the second highest worldwide production after Zea mays. In addition to its agronomic importance, rice is an important model species for monocot plants and cereals such as maize, wheat, barley and sorghum. O. sativa has a compact diploid genome of approximately 500 Mbp (n=12) compared with the multi-gigabase genomes of maize, wheat and barley.

Taxonomy ID 39947

Data source RAP-DB

More information and statistics

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Genomic alignments [57] [Show»«Hide
Oryza sativa Japonica Group : Aegilops tauschiiLASTZ_NET | stats
Oryza sativa Japonica Group : Amborella trichopodaLASTZ_NET | stats
Oryza sativa Japonica Group : Amborella trichopodaTRANSLATED_BLAT_NET | stats
Oryza sativa Japonica Group : Arabidopsis lyrataLASTZ_NET | stats
Oryza sativa Japonica Group : Arabidopsis thalianaLASTZ_NET | stats
Oryza sativa Japonica Group : Beta vulgarisLASTZ_NET | stats
Oryza sativa Japonica Group : Brachypodium distachyonLASTZ_NET | stats
Oryza sativa Japonica Group : Brassica napusLASTZ_NET | stats
Oryza sativa Japonica Group : Brassica oleraceaLASTZ_NET | stats
Oryza sativa Japonica Group : Brassica rapaLASTZ_NET | stats
Oryza sativa Japonica Group : Chlamydomonas reinhardtiiLASTZ_NET | stats
Oryza sativa Japonica Group : Chondrus crispusLASTZ_NET | stats
Oryza sativa Japonica Group : Corchorus capsularisLASTZ_NET | stats
Oryza sativa Japonica Group : Cucumis sativusLASTZ_NET | stats
Oryza sativa Japonica Group : Cyanidioschyzon merolaeLASTZ_NET | stats
Oryza sativa Japonica Group : Daucus carotaLASTZ_NET | stats
Oryza sativa Japonica Group : Dioscorea rotundataLASTZ_NET | stats
Oryza sativa Japonica Group : Galdieria sulphurariaLASTZ_NET | stats
Oryza sativa Japonica Group : Glycine maxLASTZ_NET | stats
Oryza sativa Japonica Group : Gossypium raimondiiLASTZ_NET | stats
Oryza sativa Japonica Group : Helianthus annuusLASTZ_NET | stats
Oryza sativa Japonica Group : Hordeum vulgareLASTZ_NET | stats
Oryza sativa Japonica Group : Leersia perrieriLASTZ_NET | stats
Oryza sativa Japonica Group : Lupinus angustifoliusLASTZ_NET | stats
Oryza sativa Japonica Group : Manihot esculentaLASTZ_NET | stats
Oryza sativa Japonica Group : Medicago truncatulaLASTZ_NET | stats
Oryza sativa Japonica Group : Musa acuminataLASTZ_NET | stats
Oryza sativa Japonica Group : Nicotiana attenuataLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza barthiiLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza brachyanthaLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza glaberrimaLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza glumipatulaLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza longistaminataLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza meridionalisLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza nivaraLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza punctataLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza rufipogonLASTZ_NET | stats
Oryza sativa Japonica Group : Oryza sativa Indica GroupLASTZ_NET | stats
Oryza sativa Japonica Group : Ostreococcus lucimarinusLASTZ_NET | stats
Oryza sativa Japonica Group : Phaseolus vulgarisLASTZ_NET | stats
Oryza sativa Japonica Group : Physcomitrella patensLASTZ_NET | stats
Oryza sativa Japonica Group : Populus trichocarpaLASTZ_NET | stats
Oryza sativa Japonica Group : Prunus persicaLASTZ_NET | stats
Oryza sativa Japonica Group : Selaginella moellendorffiiLASTZ_NET | stats
Oryza sativa Japonica Group : Setaria italicaLASTZ_NET | stats
Oryza sativa Japonica Group : Solanum lycopersicumLASTZ_NET | stats
Oryza sativa Japonica Group : Solanum tuberosumLASTZ_NET | stats
Oryza sativa Japonica Group : Sorghum bicolorLASTZ_NET | stats
Oryza sativa Japonica Group : Theobroma cacaoLASTZ_NET | stats
Oryza sativa Japonica Group : Trifolium pratenseLASTZ_NET | stats
Oryza sativa Japonica Group : Triticum aestivumLASTZ_NET | stats
Oryza sativa Japonica Group : Triticum dicoccoidesLASTZ_NET | stats
Oryza sativa Japonica Group : Triticum urartuLASTZ_NET | stats
Oryza sativa Japonica Group : Vigna angularisLASTZ_NET | stats
Oryza sativa Japonica Group : Vigna radiataLASTZ_NET | stats
Oryza sativa Japonica Group : Vitis viniferaLASTZ_NET | stats
Oryza sativa Japonica Group : Zea maysLASTZ_NET | stats
]

Variation

What can I find? Short sequence variants and longer structural variants.

More about variation in Oryza sativa Japonica Group

More about variation in Ensembl Plants

Download all variants - GVF - VCF - VEP

Variant Effect Predictor

About this species