Oryza nivara (Oryza_nivara_v1.0)
Location
About this transcript

This transcript has 27 exons, is annotated with 52 domains and features and maps to 50 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ONIVA11G02210.12736911aa
 
Protein coding
A0A0E0IXU8 Ensembl Canonical
-ONIVA11G02210.22685894aa
 
Protein coding
A0A0E0IXU9 -

Domains

Show/hide columns
  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
CDD45377-cd17330-
PROSITE profiles782817-PS50294-
PANTHER462887Glutamate-rich WD repeat-containingPTHR45903IPR051972 [Display all genes with this domain]
Pfam483549Histone-binding protein RBBP4, N-terminalPF12265IPR022052 [Display all genes with this domain]
Gene3D37381MFS transporter superfamily1.20.1250.20IPR036259 [Display all genes with this domain]
Superfamily38362MFS transporter superfamilySSF103473IPR036259 [Display all genes with this domain]
Pfam45363Major facilitator superfamilyPF07690IPR011701 [Display all genes with this domain]
SMART584626WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART650690WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART691725WD40 repeatSM00320IPR001680 [Display all genes with this domain]
PROSITE profiles704730WD40 repeatPS50082IPR001680 [Display all genes with this domain]
Pfam710725WD40 repeatPF00400IPR001680 [Display all genes with this domain]
SMART729769WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART775815WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam778815WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles782824WD40 repeatPS50082IPR001680 [Display all genes with this domain]
Superfamily589876WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
Gene3D485889WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

Other features

Show/hide columns
  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite557581
MobiDBLite564581
Phobius139
Phobius4063
Phobius6474
Phobius7593
Phobius94104
Phobius105136
Phobius137156
Phobius157178
Phobius179197
Phobius198219
Phobius220256
Phobius257280
Phobius281299
Phobius300319
Phobius320330
Phobius331349
Phobius350354
Phobius355375
Phobius376894
Seg5061
Seg419455
Seg459471
Seg565579
Seg822834
TMHMM4163
TMHMM7592
TMHMM102121
TMHMM160182
TMHMM197219
TMHMM258280
TMHMM300319
TMHMM354376