Oryza meridionalis (Oryza_meridionalis_v1.3)

About Oryza meridionalis

Oryza meridionalis is a wild rice found in Australia, one of the wild rice species included in the OMAP project. It belongs to the AA genome group. It has 12 chromosomes with a nuclear genome size of 435 Mb (flow cytometry). It is found at edges of freshwater lagoons, temporary pools, and swamps in 15-20 cm of water and grows in black, clay soil in open habitats. This work was part of the Oryza Genome Evolution project funded by NSF Award #1026200 and in collaboration with Olivier Panaud and Robert Henry.

Taxonomy ID 40149

Data source Oryza Genome Evolution Project

More information and statistics

Genome assembly: Oryza_meridionalis_v1.3

More information and statistics

Download DNA sequence (FASTA)

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Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

Regulation

What can I find? Microarray annotations.

More about the Ensembl Plants microarray annotation strategy

Gramene/Ensembl Genomes Annotation

Additional annotations generated by the Gramene and Ensembl Plants project include:

  • Gene phylogenetic trees with other Gramene species.
  • LastZ Whole Genome Alignment to Arabidopsis thaliana, Oryza sativa Japonica (IRGSP v1) and other Oryza AA genomes.
  • Orthologue based DAGchainer synteny detection against other AA genomes.
  • Mapping to the genome of multiple sequence-based feature sets using Gramene BLAT pipeline.
  • Identification of various repeat features by programs such as RepeatMasker with MIPS and AGI repeat libraries, and Dust, TRF.

About this species