We need your help! Has Ensembl saved you time or effort? Please take 15 minutes to fill in a survey and help EMBL-EBI make the case for why open data resources are critical to life science research.
https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]

Oryza barthii (O.barthii_v1)
Location
About this transcript

This transcript has 6 exons, is annotated with 30 domains and features and maps to 54 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OBART06G22000.11899632aa
 
Protein coding
A0A0D3GIZ9 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
  • loading
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........agagcatccagctcgctcaaatggccttgaggaggtcggcggcggcggcg
1OBART06G22000.1.exon120,953,39620,953,15601241
ATGTCCTGGCCGTCAGCGAGGGTGACGATGTTGGGGGACTCCATGGCCACGACGTCCTCC
GTGGTGAACCCGTCCTCGTCGCGGAGGAGCTCCTCGCTGCCGGCGGCGACCATCCCCGGC
AGGATCACCGTCCTGTGCAGCCCCGGGAGGAGGCGCTCCCTGTCGGTGTCGCCCTTCTCG
CCGACGAGCACCGCCACCTTGGACAGGTCGATGCCCCACTGTATCGACAGGTACCTGAAA
G                                                           
 Intron 1-220,953,15520,952,914242
gtgaacgcgtcgaacggttagagac..........cttccattccaatattctatggaag
2OBART06G22000.1.exon220,952,91320,952,58912325
CAAGCTTAATTTGCAAAAGTGAAGTGAAGCTGAGCATAGCAGAGCAGAGCATCCAGCTCG
CTCAAATGGCCTTGAGGAGGTCGGCGGCGGCGGCGATGTCCTGGCCGTCAGCGAGGGTGA
CGATGTTGGGGGACTCTATGGCCACGACATCCTCCGTGGTAAACCCGTCCTCGTCGCAGA
GGAGCTCTTCGCTGCCGGCGGCGACCATCCCCGGCAGGATCACCGTCCTGTGCAGCCCCG
GGAGGAGGCGCTCCCTGTCGGTATCGCCTTTCTCGCCGACGAGCACCGCCACCTTGGATA
GGTCGATGCCCCACTGTATCGACAG                                   
 Intron 2-320,952,58820,951,5651,024
gtacctgaaagattaatgcgtcgaa..........nnnnnnnnnnnnnnnacgccgccag
3OBART06G22000.1.exon320,951,56420,951,00122564
GGCGCCGCCGGCCGCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACCTCCGC
GACGCCCCAGGAGGCCGCCTTCTTCCTCGAGAGCCACAACTGGGCCCTCGAGTCCGCCGT
CCGCTCCTTCTACGACTCCGCCGACGGCGACGCCTCCGCCGCCGCCGCCGACGCGGCCGA
TCCGCCCCCCCGCCAGCCCCCGCCTCCCCCGCCCGCCAGCGATGGCGCCGACTCCGACGA
CGAGGACTACGTCGTCGGCGGCGGCGACGAGGATCAGGACGACGAGGACTACGTCGGGGA
TGGGGATGGGGACGGGGAGGGGGACGATGATGACGACGAGGACGCCGCCCTCGCCGCGGA
GGAGGCTGCGGCGTCGGACGAGCGGAGGAGGCCGCTGAAGAGGCTGAAGAGGGGCCAAAA
CGCGCGTGGCGGGAGCGGCAGCGGGAAGGGGAATGCGCGGACGCTCTCCGATCTCGGCGG
TGGCAAGGACAGCGCGGGGTCCGAGGACTCGGAGGACGACGAGTATAAGCCGCCGCAGGA
ATTATACACCGGAGGCGAAAAGAG                                    
 Intron 3-420,951,00020,949,4251,576
gtgagctctactcgccttgtatctt..........tataacttgttattacctcgtgcag
4OBART06G22000.1.exon420,949,42420,949,14220283
TGGAATGGTCGTTAGAGATCGATCTAAGCGTAAAAACCGTGCGGATGAGATCTTTAAGGA
AGCTAAGAGGAAGGGAGCAAAGAAAGGTTCATTTGAGGCTCGCCGGAAATCAAAGAGCTT
TGCTGGGACAGGCAGACTTCTAACAGGTGAATCTGCAGAGCCTGTTGCGCCTCAGTCACC
AGAAAGTATTGTCCACAACATCTATTTTTGGACCAATGGGTTCACAGTAAATGATGGTCC
ACTTAGAAGTTTTGATGATCCAGCAAATGCTTCCTTTTTAAAG                 
 Intron 4-520,949,14120,948,278864
gtaaatactttgacctgtgcaaaat..........tatttttcctttttcaattgcacag
5OBART06G22000.1.exon520,948,27720,948,1820096
AGCATCAAGAATTCTGAATGCCCATCTGAGCTTGAGCCAGCTGATAAGAAGTCTCAGGTG
AATGTGAATCTTATTCGGAAAGAGGAAAAGTGTCCT                        
 Intron 5-620,948,18120,948,09488
gtaagttttgtcagcctttgcttta..........aatgtccattgctcgaatgatgtag
6OBART06G22000.1.exon620,948,09320,947,70400390
GAACCTGTCAAGCGCGCAGCTCCATTCCATGGAGCGGCAAAAACTCTGGGGACGCCTTCT
GATAATAACTCCACACCTCCGGAGGCTACTTCTGCAGCAGCCGCTGCTTCCAGCACAGAG
ACCGCCTCCAAGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAG
ATCAGGTTCGTGGACGGCAGCCGCATGGTCGCGCGTTTCAACACGAGCCACACGATCGCG
GATGTGCGGGCGTTCATCGACACAACAAGGCCAGGAGAAGCCGGTGATTACACGCTCCAG
GCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTC
GCCAACTCGGTAATCATTCAGACAGCGTAG                              
3' downstream sequence
cttcgacagaaaacactctatcccatctgaagcgtgcaaatttcctcccc..........