Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: HMGB1 AT3G51880

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Description

high mobility group B1 [Source:NCBI gene (formerly Entrezgene);Acc:824351]

Gene Synonyms

AtHMGB1, high mobility group B1, NFD1, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1

Location

Chromosome 3: 19,246,936-19,249,200 reverse strand.

About this gene

This gene has 5 transcripts (splice variants), 188 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
HMGB1-202	AT3G51880.2	983	185aa	AT3G51880.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
HMGB1-204	AT3G51880.1	1025	178aa	AT3G51880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O49595	-	-
HMGB1-201	AT3G51880.3	997	178aa	AT3G51880.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O49595	-	-
HMGB1-203	AT3G51880.5	917	178aa	AT3G51880.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O49595	-	-
HMGB1-205	AT3G51880.4	822	161aa	AT3G51880.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4J5M5	-	-

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Summary

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